strandBool: Get logical list of strands

In JokingHero/ORFik: Open Reading Frames in Genomics

Get logical list of strands

Description

Helper function to get a logical list of True/False, if GRangesList group have + strand = T, if - strand = F Also checks for * strands, so a good check for bugs

Usage

strandBool(grl)

Arguments

grl	a GRangesList or GRanges object

Value

a logical vector

Examples

gr <- GRanges(Rle(c("chr2", "chr2", "chr1", "chr3"), c(1, 3, 2, 4)),
              IRanges(1:10, width = 10:1),
              Rle(strand(c("-", "+", "*", "+", "-")), c(1, 2, 2, 3, 2)))
strandBool(gr)

JokingHero/ORFik documentation built on Dec. 21, 2024, 12:01 a.m.