subsetCoverage: Subset GRanges to get coverage.

In JokingHero/ORFik: Open Reading Frames in Genomics

Subset GRanges to get coverage.

Description

GRanges object should be beforehand tiled to size of 1. This subsetting takes account for strand.

Usage

subsetCoverage(cov, y)

Arguments

cov	A coverage object from coverage()
y	GRanges object for which coverage should be extracted

Value

numeric vector of coverage of input GRanges object

See Also

Other features: computeFeatures(), computeFeaturesCage(), countOverlapsW(), disengagementScore(), distToCds(), distToTSS(), entropy(), floss(), fpkm(), fpkm_calc(), fractionLength(), initiationScore(), insideOutsideORF(), isInFrame(), isOverlapping(), kozakSequenceScore(), orfScore(), rankOrder(), ribosomeReleaseScore(), ribosomeStallingScore(), startRegion(), startRegionCoverage(), stopRegion(), translationalEff()

JokingHero/ORFik documentation built on Dec. 21, 2024, 12:01 a.m.