subsetToFrame: Subset GRanges to get desired frame.
In JokingHero/ORFik: Open Reading Frames in Genomics
View source: R/ranges_helpers.R
subsetToFrame R Documentation
Subset GRanges to get desired frame.
Description
Usually used for ORFs to get specific frame (0-2):
frame 0, frame 1, frame 2
Usage
subsetToFrame(x, frame)
Arguments
x
A tiled to size of 1 GRanges object
frame
A numeric indicating which frame to extract
Details
GRanges object should be beforehand
tiled to size of 1. This subsetting takes account for strand.
Value
GRanges object reduced to only first frame
Examples
subsetToFrame(GRanges("1", IRanges(1:10, width = 1), "+"), 2)
JokingHero/ORFik documentation built on Dec. 21, 2024, 12:01 a.m.
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View source: R/ranges_helpers.R
| subsetToFrame | R Documentation |
Subset GRanges to get desired frame.
Description
Usually used for ORFs to get specific frame (0-2): frame 0, frame 1, frame 2
Usage
subsetToFrame(x, frame)
Arguments
x |
A tiled to size of 1 GRanges object |
frame |
A numeric indicating which frame to extract |
Details
GRanges object should be beforehand tiled to size of 1. This subsetting takes account for strand.
Value
GRanges object reduced to only first frame
Examples
subsetToFrame(GRanges("1", IRanges(1:10, width = 1), "+"), 2)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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