trim_detection: Add trimming info to QC report
In JokingHero/ORFik: Open Reading Frames in Genomics
trim_detection R Documentation
Add trimming info to QC report
Description
Only works if alignment was done using ORFik with STAR.
Usage
trim_detection(df, finals, alignment_folder = libFolder(df, "unique"))
Arguments
df
an ORFik experiment
finals
a data.table with current output from QCreport
alignment_folder
character, default: libFolder(df, "unique").
All unique folders. trim_folders should then be relative as:
file.path(alignment_folder, "..", "trim/")
Value
a data.table of the update finals object with trim info
JokingHero/ORFik documentation built on Dec. 21, 2024, 12:01 a.m.
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| trim_detection | R Documentation |
Add trimming info to QC report
Description
Only works if alignment was done using ORFik with STAR.
Usage
trim_detection(df, finals, alignment_folder = libFolder(df, "unique"))
Arguments
df |
an ORFik |
finals |
a data.table with current output from QCreport |
alignment_folder |
character, default: |
Value
a data.table of the update finals object with trim info
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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