txNamesToGeneNames: Convert transcript names to gene names
In JokingHero/ORFik: Open Reading Frames in Genomics
txNamesToGeneNames R Documentation
Convert transcript names to gene names
Description
Works for ensembl, UCSC and other standard annotations.
Usage
txNamesToGeneNames(txNames, txdb)
Arguments
txNames
character vector, the transcript names to convert. Can also be
a named object with tx names (like a GRangesList), will then extract names.
txdb
the transcript database to use or gtf/gff path to it.
Value
character vector of gene names
Examples
df <- ORFik.template.experiment()
txdb <- loadTxdb(df)
loadRegions(txdb, "cds") # using tx names
txNamesToGeneNames(cds, txdb)
# Identical to:
loadRegions(txdb, "cds", by = "gene")
JokingHero/ORFik documentation built on Dec. 21, 2024, 12:01 a.m.
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| txNamesToGeneNames | R Documentation |
Convert transcript names to gene names
Description
Works for ensembl, UCSC and other standard annotations.
Usage
txNamesToGeneNames(txNames, txdb)
Arguments
txNames |
character vector, the transcript names to convert. Can also be a named object with tx names (like a GRangesList), will then extract names. |
txdb |
the transcript database to use or gtf/gff path to it. |
Value
character vector of gene names
Examples
df <- ORFik.template.experiment()
txdb <- loadTxdb(df)
loadRegions(txdb, "cds") # using tx names
txNamesToGeneNames(cds, txdb)
# Identical to:
loadRegions(txdb, "cds", by = "gene")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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