validSeqlevels: Helper function to find overlaping seqlevels
In JokingHero/ORFik: Open Reading Frames in Genomics
validSeqlevels R Documentation
Helper function to find overlaping seqlevels
Description
Keep only seqnames in reads that are in grl
Useful to avoid seqname warnings in bioC
Usage
validSeqlevels(grl, reads)
Arguments
grl
a GRangesList or GRanges object
reads
a GRanges, GAlignment or GAlignmentPairs object
Value
a character vector of valid seqlevels
See Also
Other validity:
checkRFP(),
checkRNA(),
is.ORF(),
is.gr_or_grl(),
is.grl(),
is.range(),
validGRL()
JokingHero/ORFik documentation built on Dec. 21, 2024, 12:01 a.m.
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| validSeqlevels | R Documentation |
Helper function to find overlaping seqlevels
Description
Keep only seqnames in reads that are in grl Useful to avoid seqname warnings in bioC
Usage
validSeqlevels(grl, reads)
Arguments
grl |
a |
reads |
a GRanges, GAlignment or GAlignmentPairs object |
Value
a character vector of valid seqlevels
See Also
Other validity:
checkRFP(),
checkRNA(),
is.ORF(),
is.gr_or_grl(),
is.grl(),
is.range(),
validGRL()
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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