qpcr_outlier_context: Show replicates that contain outliers

In JorikBot/tidyqpcr: Function for tidy ddCt qPCR analysis

Description

qpcr_outlier_context shows all the technical replicates that contain at least one outlier. This function takes the raw data and the output from qpcr_clean as input.

Usage

qpcr_outlier_context(raw_data, clean_data, ...)

Arguments

raw_data	A data frame or tibble. Here you supply the raw unfiltered data.
clean_data	A data frame or tibble. Here you supply the cleaned data from the qpcr_clean function.
...	Tidy-select. One or more unquoted expressions separated by commas. All other column names, excluding the column containing the Cq values.

Value

Returns the same type as the input (e.g. a data frame or tibble). Only the rows of technical replicate group containing at least one outlier are returned. The values that are deemed outliers are marked with TRUE in the column "outlier".

Examples

outlier_triplets <- qpcr_outlier_context(raw_data = ex_data,
                                         clean_data = ex_clean,
                                         treatment, bio_rep, primer_pair)

JorikBot/tidyqpcr documentation built on Jan. 28, 2021, 11:44 a.m.