plot_target_count: Plot count of miRNA targets

In JulFriedrich/miRetrieve: miRNA Text Mining in Abstracts

Description

Plot count of miRNA targets.

Usage

plot_target_count(
  df,
  top = NULL,
  threshold = NULL,
  colour = "steelblue3",
  col.target = Target,
  title = NULL
)

Arguments

df	Data frame with miRNA targets.
top	Numeric. Specifies number of top targets to be plotted.
threshold	Numeric. Specifies how often a target must be in col.target to be plotted.
colour	String. Colour of bar plot.
col.target	Symbol. Column containing miRNA targets.
title	String. Plot title.

Details

Plot count of miRNA targets as a bar plot. How many targets are plotted is determined either by the top or by the threshold argument. If top is given, targets with the highest count are plotted. Ties among targets with the highest count are treated as the same rank, e.g. if PTEN, AKT, and VEGFA all had the highest count, they would all be plotted by specifying top = 1, top = 2, and top = 3. If threshold is given, only targets with a count of at least threshold are plotted. If neither top nor threshold is given, top is automatically set to 5.

Value

Bar plot with target counts.

See Also

count_target(), join_targets()

Other target functions: count_target(), join_mirtarbase(), join_targets(), plot_target_mir_scatter()

JulFriedrich/miRetrieve documentation built on Sept. 20, 2021, 11:37 p.m.