Files in JuliusCampbell/TITAN
Builds LDA Topic Models for scRNA-seq data
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/GeneScores.R
R/GetTopics.R
R/ImputeAndAddTopics.R
R/LDAelbowPlot.R
R/Plot2Topics.R
R/TopicHeatmaps.R
R/TopicWordDistribution .R
R/TopicWordTable.R
R/TransferTopics.R
R/addTopicsToSeuratObject.R
R/normalize.R
R/runLDA.R
R/threshold.R
README.md
TITAN.Rproj
data/Elbowplot_T47D_PEPE.png
data/Elbowplot_T47D_PEPE_SCE.png
data/Model_PEPE_T47D_20T_CLR_5000Variable_M10.rds
data/Model_SCE_PEPE_T47D_20T.rds
man/GeneScores.Rd
man/GetTopics.Rd
man/HeatmapSortByTopic.Rd
man/HeatmapSortByTopicAsWellAsAnno.Rd
man/HeatmapTopic.Rd
man/ImputeAndAddTopics.Rd
man/LDAelbowPlot.Rd
man/SCE_FeaturePlot.Rd
man/TopTopicGenes.Rd
man/TopicWordTable.Rd
man/TransferTopics.Rd
man/addTopicsToSeuratObject.Rd
man/gg_color_hue.Rd
man/normalize.Rd
man/plot2Topics.Rd
man/runLDA.Rd
man/threshold.Rd
vignettes/.gitignore
vignettes/TITAN_vignette.Rmd
vignettes/TITAN_vignette.md
vignettes/TITAN_vignette_2.Rmd
vignettes/TITAN_vignette_files/figure-gfm/unnamed-chunk-11-1.png
vignettes/TITAN_vignette_files/figure-gfm/unnamed-chunk-12-1.png
vignettes/TITAN_vignette_files/figure-gfm/unnamed-chunk-13-1.png
vignettes/TITAN_vignette_files/figure-gfm/unnamed-chunk-14-1.png
vignettes/TITAN_vignette_files/figure-gfm/unnamed-chunk-14-2.png
vignettes/TITAN_vignette_files/figure-gfm/unnamed-chunk-15-1.png
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vignettes/TITAN_vignette_files/figure-gfm/unnamed-chunk-16-1.png
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vignettes/TITAN_vignette_files/figure-html/unnamed-chunk-11-1.png
vignettes/TITAN_vignette_files/figure-html/unnamed-chunk-12-1.png
vignettes/TITAN_vignette_files/figure-html/unnamed-chunk-13-1.png
vignettes/TITAN_vignette_files/figure-html/unnamed-chunk-14-1.png
vignettes/TITAN_vignette_files/figure-html/unnamed-chunk-14-2.png
vignettes/TITAN_vignette_files/figure-html/unnamed-chunk-15-1.png
vignettes/TITAN_vignette_files/figure-html/unnamed-chunk-16-1.png
vignettes/TITAN_vignette_files/figure-html/unnamed-chunk-17-1.png
