HeatmapTopic: Topic Heatmap
In JuliusCampbell/TITAN: Builds LDA Topic Models for scRNA-seq data
View source: R/TopicHeatmaps.R
HeatmapTopic R Documentation
Topic Heatmap
Description
This function produces a Heatmap showing how much each cell lies within each topic
Usage
HeatmapTopic(Object, topics, AnnoVector, AnnoName, clusterTopics = F)
Arguments
Object
Seurat object containing the data the model was created with.
topics
document-topic matrix
AnnoVector
Vector of cell annotations
AnnoName
Name of cell annotation
clusterTopics
Logical whether to cluster topics or not
Value
pheatmap object
Examples
Heatmap(SeuratObj, DocTopMat, SeuratObj$annotation, "NameOfAnnotation")
JuliusCampbell/TITAN documentation built on May 24, 2023, 3:42 p.m.
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View source: R/TopicHeatmaps.R
| HeatmapTopic | R Documentation |
Topic Heatmap
Description
This function produces a Heatmap showing how much each cell lies within each topic
Usage
HeatmapTopic(Object, topics, AnnoVector, AnnoName, clusterTopics = F)
Arguments
Object |
Seurat object containing the data the model was created with. |
topics |
document-topic matrix |
AnnoVector |
Vector of cell annotations |
AnnoName |
Name of cell annotation |
clusterTopics |
Logical whether to cluster topics or not |
Value
pheatmap object
Examples
Heatmap(SeuratObj, DocTopMat, SeuratObj$annotation, "NameOfAnnotation")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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