HeatmapSortByTopicAsWellAsAnno: Topic Heatmap - sorted by topic and annotation

In JuliusCampbell/TITAN: Builds LDA Topic Models for scRNA-seq data

Topic Heatmap - sorted by topic and annotation

Description

This function produces a Heatmap showing how much each cell lies within each topic. The cells in the Heatmap are sorted based on their scores in a given topic. The annotations are also sorted by their values.

Usage

HeatmapSortByTopicAsWellAsAnno(
  Object,
  topics,
  sortByTopic = "Topic_1",
  AnnoVector,
  AnnoName,
  clusterTopics = F
)

Arguments

Object	Seurat object containing the data the model was created with.
topics	document-topic matrix
sortByTopic	topic to be sorted by
AnnoVector	Vector of cell annotations
AnnoName	Name of cell annotation
clusterTopics	Logical whether to cluster topics or not

Value

pheatmap object

Examples

HeatmapSortByTopicAsWellAsAnno(SeuratObj, DocTopMat, "Topic_16", SeuratObj$annotation, "NameOfAnnotation")

JuliusCampbell/TITAN documentation built on May 24, 2023, 3:42 p.m.