Man pages for JuliusCampbell/TITAN
Builds LDA Topic Models for scRNA-seq data
| addTopicsToSeuratObject | Adds topic information to Seurat metadata |
| GeneScores | GeneScoreDistubiton |
| GetTopics | Extract Topic Information |
| gg_color_hue | Creates vector of annotation colors |
| HeatmapSortByTopic | Topic Heatmap - sorted by topic |
| HeatmapSortByTopicAsWellAsAnno | Topic Heatmap - sorted by topic and annotation |
| HeatmapTopic | Topic Heatmap |
| ImputeAndAddTopics | Adds imputed Topics to a seruat object |
| LDAelbowPlot | Topic Elbow Plot |
| normalize | Normalize a matrix/vector to sum to one (probability simplex) |
| plot2Topics | Plot2Topics |
| runLDA | Runs LDA Model |
| SCE_FeaturePlot | TopicWordTable function for SingleCellExperiment |
| threshold | Threshold a matrix/vector below and above |
| TopicWordTable | TopicWordTable function for SingleCellExperiment |
| TopTopicGenes | Extract Top Topic Genes |
| TransferTopics | Transfers topics from one dataset to another |
