Files in JunyanSong/SCclust
Single Cell Copy Number Analysis and Clustering
.DS_Store
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/.DS_Store
R/Output.R
R/TreePy.R
R/binBoundary.R
R/binCount.R
R/data.R
R/findClones.R
R/findsubclones.R
R/fisherFDR.R
R/gcCBS.R
R/gcCBS_all.R
R/gcCBS_one.R
R/hcClimb.R
R/hclustTree.R
R/modeofmodes.R
R/preprocess.R
R/selectpin.R
R/simFisher.R
R/simFisherWrapper.R
R/varbinGC.R
README.md
SCclust.Rproj
chrom.sizes.py
data/.DS_Store
data/badbins.20k.rda
data/badbins.50k.rda
data/badbins.5k.rda
data/dropareas.rda
data/example1.varbin.20k.rda
data/hg19.varbin.gc.20k.rda
data/hg19.varbin.gc.50k.rda
data/hg19.varbin.gc.5k.rda
generate.reads.py
hg19.chrY.psr.py
hg38.chrY.psr.py
inst/bin_boundary.py
inst/bin_count.py
inst/varbin_GC.py
man/.DS_Store
man/bin_boundaries.Rd
man/bin_counts.Rd
man/cbs.segment_all.Rd
man/cbs.segment_one.Rd
man/dropareas.Rd
man/example1.varbin.20k.Rd
man/fdr_fisherPV.Rd
man/find_clone.Rd
man/find_subclone.Rd
man/findpins.Rd
man/findsmears.Rd
man/gc_one.Rd
man/hclust_tree.Rd
man/hg19.chrom.sizes.Rd
man/hg19.varbin.gc.20k.Rd
man/hg19.varbin.gc.50k.Rd
man/hg19.varbin.gc.5k.Rd
man/output_viewer.Rd
man/preprocess_segfile.Rd
man/simFisher_parallel.Rd
man/varbinGC.Rd
mappable.regions.py
vignettes/.DS_Store
vignettes/.Rapp.history
vignettes/vignette.R
vignettes/vignette.Rmd
vignettes/vignette.html
vignettes/vignette.pdf
