output_viewer: Generate files for the downstream visualization using viewer.
In JunyanSong/SCclust: Single Cell Copy Number Analysis and Clustering

output_viewer

R Documentation

Generate files for the downstream visualization using viewer.

Generate files for the downstream visualization using viewer.

output_viewer(output_file_dir, seg.quantal, ratio.quantal, pins, pinmat,
  mat_dist, hc_clone, sub_hc_clone, subcloneTooBig = 0.8, smear = 2, study)

`output_file_dir`	The directory made to save the output files for the viewer.
`seg.quantal`	The seg.quantal profiles.
`ratio.quantal`	The ratio.quantal profiles
`pins`	The pins.
`pinmat`	The pinmat.
`mat_dist`	The dissmilarity based on Fisher's test p-values for hierarchical clustering.
`hc_clone`	The hc object with clones identified.
`sub_hc_clone`	The list of hc objects in clones with subclones identified.
`subcloneTooBig`	Default: 0.8
`smear`	The smear parameter. Default value: 2
`study`	The name of your study.