varbinGC | R Documentation |
Given the bin boundaries, compute the GC content in each bin.
varbinGC(chromFa_dir, data_dir, Nk = "5k")
chromFa_dir |
File directory that contains the reference genome. |
data_dir |
File directory. The directory that contains the files of mappable regions, bin boundaries etc. The GC content file (varbin.gc.content.Nk.txt) will also be output to this directory. |
Nk |
Default value: 5k. It denotes the number of bins. 5000 = 5k, 10000 = 10k, ... |
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