GeneSetConversion: Gene symbol conversion from human to mouse

In Kan-E/rnaseqviewer: Toolkit for automated, systematic, and integrated RNA-seq DEG analysis

Gene symbol conversion from human to mouse

Description

Gene symbol conversion from human to mouse

Usage

GeneSetConversion(Gene_set_dir)

Arguments

Gene_set_dir

Directory including Gene_set txt files

References

Mapping identifiers for the integration of genomic datasets with the R/Bioconductor package biomaRt. Steffen Durinck, Paul T. Spellman, Ewan Birney and Wolfgang Huber, Nature Protocols 4, 1184-1191 (2009).

Examples

library(rnaseqviewer)

data(DEG_list)
dir.create("DEG_list")
write.table(DEG_list[1], file = "DEG_list/dataset1.txt", sep = "\t", quote = FALSE)
write.table(DEG_list[2], file = "DEG_list/dataset2.txt", sep = "\t", quote = FALSE)
GeneSetConversion("DEG_list")

Kan-E/rnaseqviewer documentation built on May 30, 2022, 10:34 a.m.