ebseq: ebseq

In Kan-E/rnaseqviewer: Toolkit for automated, systematic, and integrated RNA-seq DEG analysis

ebseq

Description

ebseq

Usage

ebseq(Row_count_matrix)

Arguments

Row_count_matrix

Row Count matrix txt file (Not normalized count matrix)

References

Ning Leng and Christina Kendziorski (2020). EBSeq: An R package for gene and isoform differential expression analysis of RNA-seq data.

Examples

library(rnaseqviewer)

#pairwise DEG analysis

data(Row_count_data)
write.table(Row_count_data, file = "Row_count_data.txt", sep = "\t", quote = FALSE)
ebseq("Row_count_data.txt")

#three conditions DEG analysis

data("Row_count_3conditions")
write.table(Row_count_3conditions, file = "Row_count_3conditions.txt", sep = "\t", quote = FALSE)
ebseq("Row_count_3conditions.txt")

Kan-E/rnaseqviewer documentation built on May 30, 2022, 10:34 a.m.