deseq2 | R Documentation |
deseq2
deseq2(Row_count_matrix, method = "BH")
Row_count_matrix |
Row Count matrix txt file (Not normalized count matrix) |
method |
BH, Qvalue, or IHW |
Love, M.I., Huber, W., Anders, S. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2 Genome Biology 15(12):550 (2014)
Nikolaos Ignatiadis, Bernd Klaus, Judith Zaugg and Wolfgang Huber (2016): Data-driven hypothesis weighting increases detection power in genome-scale multiple testing. Nature Methods 13:577, doi: 10.1038/nmeth.3885
John D. Storey, Andrew J. Bass, Alan Dabney and David Robinson (2021). qvalue: Q-value estimation for false discovery rate control. R package version 2.26.0. http://github.com/jdstorey/qvalue
library(rnaseqviewer) data(Row_count_data) write.table(Row_count_data, file = "Row_count_data.txt", sep = "\t", quote = FALSE) deseq2("Row_count_data.txt")
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