Omics_overview: Dendrogram, PCA, and mds

In Kan-E/rnaseqviewer: Toolkit for automated, systematic, and integrated RNA-seq DEG analysis

Dendrogram, PCA, and mds

Description

Dendrogram, PCA, and mds

Usage

Omics_overview(Count_matrix, heatmap = TRUE)

Arguments

Count_matrix	count matrix txt file
heatmap	In the case of False, heatmap not shown.

References

H. Wickham. ggplot2: Elegant Graphics for Data Analysis. Springer-Verlag New York, 2016.

Andrie de Vries and Brian D. Ripley (2020). ggdendro: Create Dendrograms and Tree Diagrams Using 'ggplot2'. R package version 0.1.22. https://CRAN.R-project.org/package=ggdendro

Examples

library(rnaseqviewer)
data(Row_count_3conditions)
write.table(Row_count_3conditions, file = "Row_count_3conditions.txt", sep = "\t", quote = FALSE)
ebseq("Row_count_3conditions.txt")
Omics_overview("Normalized_count_matrix_from_Row_count_3conditions_Cond1-vs-Cond2-vs-Cond3_EBseq.txt")

Kan-E/rnaseqviewer documentation built on May 30, 2022, 10:34 a.m.