exampleData: Example of data

In KosukeHamazaki/myBreedSimulatR: R Breeding Simulator for K.Hamazaki

Example of data

Description

Set of data useful for trying the package.

Usage

exampleData

Format

An object of class list of length 3.

Details

This object is a named list containing 3 elements:

• genotypes (data.frame): Genotypic data encoded in allele doses of 100 fictitious individuals with 3333 SNP markers. These individuals have 10 chromosomes of length 10^6 bases pairs.

• genoMap (data.frame): Coordinates of the 3333 individuals' markers. This data.frame contains 3 columns: chr, pos and lociNames.

• lociEffects (numeric): "true" effects of the 3333 individuals' markers about a fictitious quantitative trait based on an additive architecture.

Source

These data are simulated and was generated using the serious game "PlantBreedGame" available on GitHub: https://github.com/timflutre/PlantBreedGame

Flutre, T., Diot, J., and David, J. (2019). PlantBreedGame: A Serious Game that Puts Students in the Breeder’s Seat. Crop Science. DOI 10.2135/cropsci2019.03.0183le

Examples

exampleData$genotypes
exampleData$genoMap
exampleData$lociEffects

KosukeHamazaki/myBreedSimulatR documentation built on Aug. 31, 2024, 3:55 p.m.