LEEF_2_classify_flowcam_archive: Classify algae_traits data.frame

In LEEF-UZH/LEEF.analysis: Access Functions, Tests and Basic Analysis of the RRD Data from the LEEF Project

Classify algae_traits data.frame

Description

Classify algae_traits data.frame

Usage

LEEF_2_classify_flowcam_archive(
  extracted_dir = NULL,
  timestamps,
  algae_traits_name = "algae_traits_filtered.rds",
  classifier = NULL,
  species_tracked = NULL,
  output,
  mc.cores = 1,
  bottle = NULL
)

Arguments

extracted_dir	path to the extracted data
timestamps	character vector containing the timestamps to be classified
classifier	classifier for flowcytometer
species_tracked	names of the species tracked as a character vector. If NULL it will be read from the original configuration file in the datadir.
output	path to which the classified data will be saved as rds
mc.cores	number of cores to be used. Defaults to 1
bottle	if not 'NULL' (default) only classify this bottle. Needs to be a single bottle!

Value

invisible NULL

LEEF-UZH/LEEF.analysis documentation built on Feb. 8, 2025, 11:18 a.m.