classify_flowcam_files: Classify algae_traits data.frame

In LEEF-UZH/LEEF.analysis: Access Functions, Tests and Basic Analysis of the RRD Data from the LEEF Project

Classify algae_traits data.frame

Description

Classify algae_traits data.frame

Usage

classify_flowcam_files(
  datadir,
  algae_traits_name = "algae_traits_filtered.rds",
  classifier_constant_name,
  classifier_increasing_name,
  timestamp = "55555555",
  species_tracked = NULL,
  bottle = NULL
)

Arguments

datadir	character vector containing the root directory for all files
algae_traits_name	character vector containing the name of the algae traits file without path
classifier_constant_name	character vector of name of the classifier for temperature treatment constant including path
classifier_increasing_name	character vector of name of the classifier for temperature treatment increasing including path
timestamp	timestamp to be used to stamp the classified data
species_tracked	names of the species tracked as a character vector. If NULL it will be read from the original configuration file in the datadir.
bottle	if not 'NULL' (default) only classify this bottle. Needs to be a single bottle!

Value

list containing two objects: - algae_traits including species - algae_densities densities of the different particles identified

LEEF-UZH/LEEF.analysis documentation built on Feb. 8, 2025, 11:18 a.m.