LEEF_2_plot_density_species_per_bottle_per_timestamp: Plot diagnostic plot to check number of species per timestamp...

In LEEF-UZH/LEEF.analysis: Access Functions, Tests and Basic Analysis of the RRD Data from the LEEF Project

Plot diagnostic plot to check number of species per timestamp for LEEF-2

Description

Plot diagnostic plot to check number of species per timestamp for LEEF-2

Usage

LEEF_2_plot_density_species_per_bottle_per_timestamp(
  db = getOption("RRDdb", "LEEF.RRD.sqlite"),
  transform_density_4throot = TRUE,
  measurement = "bemovi_mag_16",
  species_set_id = NULL,
  treatment_begin_day = 70,
  treatment_end_day = 154,
  arrow = FALSE
)

Arguments

db	fully qualified path to the sqlite database. Default, read from option RRDdb. If not set, defaults to option RRDdb; if this is not set, defaults to LEEF.RRD.sqlite
transform_density_4throot	if TRUE, density is transformed using 4th root transformation.
measurement	the measurement to be plotted. If NULL, the default, they are plotted by temperature treatment (constant & increasing)
species_set_id	id of species set to use for filtering
treatment_begin_day	begin of treatment (vertical red line in plot). If NULL none is plotted.
treatment_end_day	end of treatment (vertical red line in plot). If NULL none is plotted.
arrow	if TRUE read data from arrow instead of sqlite database

Value

ggplot object of the plot

LEEF-UZH/LEEF.analysis documentation built on Feb. 8, 2025, 11:18 a.m.