LEEF_2_density_flowcytometer_archive: Gate and extract densities from flowcytometer data by using...

In LEEF-UZH/LEEF.analysis: Access Functions, Tests and Basic Analysis of the RRD Data from the LEEF Project

Gate and extract densities from flowcytometer data by using the archived data

Description

Gate and extract densities from flowcytometer data by using the archived data

Usage

LEEF_2_density_flowcytometer_archive(
  extracted_dir,
  timestamps,
  output,
  use_H,
  gates_coordinates,
  min_FSC.A = NULL,
  particles = NULL,
  mc.cores = 1
)

Arguments

extracted_dir	srchive directory of the extracted data
timestamps	character vector containing the timestamps to be classified
output	path to which the classified data will be saved as rds
use_H	if TRUE, gating will be done using height, otherwie area
gates_coordinates	the gates_coordinates
min_FSC.A	numeric. If !NULL, FSA.A <= min_FSC.A will be fitered out by using a rectangular filter flowCore::rectangleGate(filterId="filter_out_0", "FSC-A" = c(min_FSC.A, +Inf))
particles	particle class to extract. Mainly bacteria or algae.

Value

invisible NULL

LEEF-UZH/LEEF.analysis documentation built on Feb. 8, 2025, 11:18 a.m.