Man pages for LTLA/SingleR
Reference-Based Single-Cell RNA-Seq Annotation

aggregateReferenceAggregate reference samples
classifySingleRClassify cells with SingleR
combineCommonResultsCombine SingleR results with common genes
combineRecomputedResultsCombine SingleR results with recomputation
datasetsReference dataset extractors
getClassicMarkersGet classic markers
getDeltaFromMedianCompute the difference from median
matchReferencesMatch labels from two references
mockDataMock data for examples
plotDeltaDistributionPlot delta distributions
plotScoreDistributionPlot score distributions
plotScoreHeatmapPlot a score heatmap
pruneScoresPrune out low-quality assignments
rebuildIndexRebuild the index
SingleRAnnotate scRNA-seq data
trainSingleRTrain the SingleR classifier
LTLA/SingleR documentation built on July 30, 2022, 4:11 a.m.