API for LTLA/SingleR
Reference-Based Single-Cell RNA-Seq Annotation

Global functions
.aggregate_internal Source code
.build_index Source code
.build_trained_index Source code
.classify_internals Source code
.combine_result_frames Source code
.convert_per_label_set Source code
.create_label_origin Source code
.define_seeds Source code
.ensure_named Source code
.get_genes_by_de Source code
.get_levels Source code
.get_seed Source code
.identify_genes Source code
.is_data_frame Source code
.is_list Source code
.is_solo Source code
.make_annotation_col Source code
.make_heatmap_annotation_colors Source code
.make_heatmap_colors_discrete Source code
.make_heatmap_colors_numeric Source code
.median_by_label Source code
.mockRefData Man page Source code
.mockTestData Man page Source code
.name_unless_NULL Source code
.order_score_matrix_cells Source code
.pick_colors_for_df Source code
.plot_delta_distribution Source code
.plot_score_distribution Source code
.plot_score_heatmap Source code
.pretty_violins Source code
.realize_reference Source code
.rebuild_index Source code
.set_seed Source code
.to_clean_matrix Source code
.trim_byLabel_and_normalize_scores Source code
.trim_normalize_reorder_scores Source code
.validate_de_gene_set Source code
.values_title Source code
BlueprintEncodeData Man page Source code
DatabaseImmuneCellExpressionData Man page Source code
HumanPrimaryCellAtlasData Man page Source code
ImmGenData Man page Source code
MonacoImmuneData Man page Source code
MouseRNAseqData Man page Source code
NovershternHematopoieticData Man page Source code
SingleR Man page Source code
aggregateReference Man page Source code
classifySingleR Man page Source code
combineCommonResults Man page Source code
combineRecomputedResults Man page Source code
datasets Man page
find_classic_markers Source code
getClassicMarkers Man page Source code
getDeltaFromMedian Man page Source code
get_subset Source code
integrate_build Source code
integrate_run Source code
is_valid_built Source code
matchReferences Man page Source code
plotDeltaDistribution Man page Source code
plotScoreDistribution Man page Source code
plotScoreHeatmap Man page Source code
prebuild Source code
pruneScores Man page Source code
rebuildIndex Man page Source code
run Source code
trainSingleR Man page Source code
LTLA/SingleR documentation built on July 30, 2022, 4:11 a.m.