Files in LTLA/SingleR
Reference-Based Single-Cell RNA-Seq Annotation

.Rbuildignore
.github/workflows/check-bioc.yml
.gitignore
DESCRIPTION
Dockerfile
LICENSE
NAMESPACE
R/RcppExports.R R/SingleR.R R/aggregateReference.R R/classifySingleR.R R/combineCommonResults.R R/combineRecomputedResults.R R/datasets.R R/getClassicMarkers.R R/getDeltaFromMedian.R R/matchReferences.R R/mockData.R R/plotDeltaDistribution.R R/plotScoreDistribution.R R/plotScoreHeatmap.R R/pruneScores.R R/rebuildIndices.R R/trainSingleR.R R/utils.R README.md
inst/CITATION
inst/NEWS.Rd
inst/include/singlepp/BasicBuilder.hpp
inst/include/singlepp/BasicScorer.hpp
inst/include/singlepp/ChooseClassicMarkers.hpp
inst/include/singlepp/Classifier.hpp
inst/include/singlepp/IntegratedBuilder.hpp
inst/include/singlepp/IntegratedScorer.hpp
inst/include/singlepp/Markers.hpp
inst/include/singlepp/annotate_cells.hpp
inst/include/singlepp/build_indices.hpp
inst/include/singlepp/compute_scores.hpp
inst/include/singlepp/fine_tune.hpp
inst/include/singlepp/load_references.hpp
inst/include/singlepp/process_features.hpp
inst/include/singlepp/scaled_ranks.hpp
inst/include/singlepp/singlepp.hpp
inst/include/source.sh
man/SingleR.Rd man/aggregateReference.Rd man/classifySingleR.Rd man/combineCommonResults.Rd man/combineRecomputedResults.Rd man/datasets.Rd man/getClassicMarkers.Rd man/getDeltaFromMedian.Rd man/matchReferences.Rd man/mockData.Rd man/plotDeltaDistribution.Rd man/plotScoreDistribution.Rd man/plotScoreHeatmap.Rd man/pruneScores.Rd man/rebuildIndex.Rd man/trainSingleR.Rd
src/Makevars
src/RcppExports.cpp
src/find_classic_markers.cpp
src/integrate_build.cpp
src/integrate_run.cpp
src/prebuild.cpp
src/run.cpp
src/utils.h
tests/testthat.R tests/testthat/setup.R tests/testthat/test-SingleR.R tests/testthat/test-aggregate.R tests/testthat/test-classify.R tests/testthat/test-heatmap.R tests/testthat/test-markers.R tests/testthat/test-prune.R tests/testthat/test-rebuild.R tests/testthat/test-recomputed.R tests/testthat/test-score-dist.R tests/testthat/test-train.R vignettes/SingleR.Rmd
vignettes/ref.bib
LTLA/SingleR documentation built on July 30, 2022, 4:11 a.m.