Files in LTLA/SingleR
Reference-Based Single-Cell RNA-Seq Annotation
.Rbuildignore
.github/workflows/check-bioc.yml
.gitignore
DESCRIPTION
Dockerfile
LICENSE
NAMESPACE
R/RcppExports.R
R/SingleR.R
R/aggregateReference.R
R/classifySingleR.R
R/combineCommonResults.R
R/combineRecomputedResults.R
R/datasets.R
R/getClassicMarkers.R
R/getDeltaFromMedian.R
R/matchReferences.R
R/mockData.R
R/plotDeltaDistribution.R
R/plotScoreDistribution.R
R/plotScoreHeatmap.R
R/pruneScores.R
R/rebuildIndices.R
R/trainSingleR.R
R/utils.R
README.md
inst/CITATION
inst/NEWS.Rd
inst/include/singlepp/BasicBuilder.hpp
inst/include/singlepp/BasicScorer.hpp
inst/include/singlepp/ChooseClassicMarkers.hpp
inst/include/singlepp/Classifier.hpp
inst/include/singlepp/IntegratedBuilder.hpp
inst/include/singlepp/IntegratedScorer.hpp
inst/include/singlepp/Markers.hpp
inst/include/singlepp/annotate_cells.hpp
inst/include/singlepp/build_indices.hpp
inst/include/singlepp/compute_scores.hpp
inst/include/singlepp/fine_tune.hpp
inst/include/singlepp/load_references.hpp
inst/include/singlepp/macros.hpp
inst/include/singlepp/process_features.hpp
inst/include/singlepp/scaled_ranks.hpp
inst/include/singlepp/singlepp.hpp
inst/include/source.sh
man/SingleR.Rd
man/aggregateReference.Rd
man/classifySingleR.Rd
man/combineCommonResults.Rd
man/combineRecomputedResults.Rd
man/datasets.Rd
man/getClassicMarkers.Rd
man/getDeltaFromMedian.Rd
man/matchReferences.Rd
man/mockData.Rd
man/plotDeltaDistribution.Rd
man/plotScoreDistribution.Rd
man/plotScoreHeatmap.Rd
man/pruneScores.Rd
man/rebuildIndex.Rd
man/trainSingleR.Rd
src/Makevars
src/RcppExports.cpp
src/find_classic_markers.cpp
src/grouped_medians.cpp
src/integrate_build.cpp
src/integrate_run.cpp
src/prebuild.cpp
src/run.cpp
src/utils.h
tests/testthat.R
tests/testthat/setup.R
tests/testthat/test-SingleR.R
tests/testthat/test-aggregate.R
tests/testthat/test-classify.R
tests/testthat/test-heatmap.R
tests/testthat/test-markers.R
tests/testthat/test-prune.R
tests/testthat/test-rebuild.R
tests/testthat/test-recomputed.R
tests/testthat/test-score-dist.R
tests/testthat/test-train.R
vignettes/SingleR.Rmd
vignettes/ref.bib
