| .importHicLib |
Man page
|
| .importHomer |
Man page
|
| .processChiapetName |
Man page
|
| .readBam |
Man page
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| .readTwoBams |
Man page
|
| .validateInput |
Man page
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| InteractionHelpers |
Man page
|
| InteractionTrack |
Man page
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| InteractionTrack-class |
Man page
|
| anchorOne |
Man page
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| anchorOne,GenomicInteractions-method |
Man page
|
| anchorTwo |
Man page
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| anchorTwo,GenomicInteractions-method |
Man page
|
| annotateInteractions |
Man page
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| annotateInteractions,GenomicInteractions,list-method |
Man page
|
| annotateRegions |
Man page
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| annotateRegions,GenomicInteractions,character,vector-method |
Man page
|
| annotationFeatures |
Man page
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| annotationFeatures,GenomicInteractions-method |
Man page
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| asBED |
Man page
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| asBED,GenomicInteractions-method |
Man page
|
| availableDisplayPars |
Man page
|
| calculateDistances |
Man page
|
| calculateDistances,GenomicInteractions-method |
Man page
|
| capitalize |
Man page
|
| categoriseInteractions |
Man page
|
| countsBetweenAnchors |
Man page
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| countsBetweenAnchors,GenomicInteractions,GRanges-method |
Man page
|
| description,GenomicInteractions-method |
Man page
|
| description<-,GenomicInteractions,ANY-method |
Man page
|
| export.bed12 |
Man page
|
| export.bed12,GenomicInteractions-method |
Man page
|
| export.bedpe |
Man page
|
| export.bedpe,GenomicInteractions-method |
Man page
|
| export.chiasig |
Man page
|
| export.chiasig,GenomicInteractions-method |
Man page
|
| export.igraph |
Man page
|
| export.igraph,GenomicInteractions-method |
Man page
|
| fugi-package |
Man page
|
| get_binom_ligation_threshold |
Man page
|
| get_self_ligation_threshold |
Man page
|
| getters |
Man page
|
| hg19.refseq.transcripts |
Man page
|
| hic_example_data |
Man page
|
| interactionCounts |
Man page
|
| interactionCounts,GenomicInteractions-method |
Man page
|
| interactionCounts<- |
Man page
|
| interactionCounts<-,GenomicInteractions-method |
Man page
|
| is.cis |
Man page
|
| is.cis,GenomicInteractions-method |
Man page
|
| is.dd |
Man page
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| is.dd,GenomicInteractions-method |
Man page
|
| is.dt |
Man page
|
| is.dt,GenomicInteractions-method |
Man page
|
| is.pd |
Man page
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| is.pd,GenomicInteractions-method |
Man page
|
| is.pp |
Man page
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| is.pp,GenomicInteractions-method |
Man page
|
| is.pt |
Man page
|
| is.pt,GenomicInteractions-method |
Man page
|
| is.trans |
Man page
|
| is.trans,GenomicInteractions-method |
Man page
|
| is.tt |
Man page
|
| is.tt,GenomicInteractions-method |
Man page
|
| isInteractionType |
Man page
|
| isInteractionType,GenomicInteractions-method |
Man page
|
| makeGenomicInteractionsFromFile |
Man page
|
| mm9_refseq_promoters |
Man page
|
| name |
Man page
|
| name,GenomicInteractions-method |
Man page
|
| name<- |
Man page
|
| name<-,GenomicInteractions-method |
Man page
|
| plotAvgViewpoint |
Man page
|
| plotCisTrans |
Man page
|
| plotCounts |
Man page
|
| plotDists |
Man page
|
| plotInteractionAnnotations |
Man page
|
| plotSummaryStats |
Man page
|
| plotViewpoint |
Man page
|
| removeDups |
Man page
|
| resetAnnotations |
Man page
|
| resetAnnotations,GenomicInteractions-method |
Man page
|
| sameStrand |
Man page
|
| seqinfo,GenomicInteractions-method |
Man page
|
| seqinfo<-,GenomicInteractions-method |
Man page
|
| setters |
Man page
|
| subsetByFeatures |
Man page
|
| subsetByFeatures,GenomicInteractions,GRanges,missing-method |
Man page
|
| subsetByFeatures,GenomicInteractions,GRangesList,missing-method |
Man page
|
| subsetByFeatures,GenomicInteractions,character,character-method |
Man page
|
| sum,GenomicInteractions-method |
Man page
|
| summariseByFeaturePairs |
Man page
|
| summariseByFeaturePairs,GenomicInteractions-method |
Man page
|
| summariseByFeatures |
Man page
|
| summariseByFeatures,GenomicInteractions-method |
Man page
|
| thymus_enh |
Man page
|
| viewPoint |
Man page
|
