dot-processChiapetName: Function to process names relating to interactions stored in...
In LTLA/fugi: Further Utilities for Genomic Interactions
Description
Usage
Arguments
Value
Description
In bed(n) formats interaction data cannot be stored directly due to the inability of the format to handle
trans-interactions. It is only capable of storing cis-interactions through the use of blockStarts and blockEnds.
As such the information is typically stored as a string of the format chr1:start1..end1-chr2:start2..end2,N
(e.g. \"chr1:3268539..3269061-chr10:103124111..103124631,4\".). This function takes a vector of these strings
and converts them to a data.frame.
Usage
1
Arguments
x
a vector of names stored in the bed file
Value
a data.frame containing all of the processed information
LTLA/fugi documentation built on June 22, 2019, 8:50 p.m.
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Description Usage Arguments Value
Description
In bed(n) formats interaction data cannot be stored directly due to the inability of the format to handle trans-interactions. It is only capable of storing cis-interactions through the use of blockStarts and blockEnds. As such the information is typically stored as a string of the format chr1:start1..end1-chr2:start2..end2,N (e.g. \"chr1:3268539..3269061-chr10:103124111..103124631,4\".). This function takes a vector of these strings and converts them to a data.frame.
Usage
1 |
Arguments
x |
a vector of names stored in the bed file |
Value
a data.frame containing all of the processed information
R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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