plotCounts: Plot interaction count frequency

In LTLA/fugi: Further Utilities for Genomic Interactions

Description

Plot a bar chart of the number of interactions supported by different numbers of reads in a GenomicInteractions object.

Usage

plotCounts(GIObject, normalise = FALSE, cut = 10)

Arguments

GIObject	A GenomicInteractions object.
normalise	Logical scalar specifying whether to plot the proportion of total reads instead of the count.
cut	Numeric scalar specifying the upper limit on the count, above which all interactions are aggregated into a single category. Setting this to NULL will not perform any aggregation.

Value

A ggplot2 plot.

Examples

data(hic_example_data)
hic_example_data <- updateObject(hic_example_data)

plotCounts(hic_example_data)
plotCounts(hic_example_data, normalise=TRUE)

LTLA/fugi documentation built on June 22, 2019, 8:50 p.m.