asBED: Coerce to BED structure
In LTLA/fugi: Further Utilities for Genomic Interactions

Coerce the structure of a GenomicInteractions into a GRanges following BED-like conventions, i.e., with columns for blocks and thick regions.

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## S4 method for signature 'GenomicInteractions'
asBED(x, keep.mcols = FALSE,
  score = "score")

`x`	A GenomicInteractions object.
`keep.mcols`	Logical scalar, specifying whether to keep non-BED12 columns in the output object.
`score`	String specifying which field to export as the `score` field in BED12. Defaults to "auto" which will choose `"score"`, then `"counts"`, if present, or fill the column with zeros.

Note that setting keep.mcols=TRUE may cause problems with some parsers.

A GRanges object with the metadata columns name, blockStarts and blockSizes.

Malcolm Perry, Elizabeth Ing-Simmons

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data(hic_example_data)
hic_example_data <- updateObject(hic_example_data)
asBED(hic_example_data)

LTLA/fugi documentation built on June 22, 2019, 8:50 p.m.

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