med.sum.pbset: Probe-set median summarization

In LXQin/precision: PaiREd miCrorna sImulation on Study desIgn for mOlecular classificatioN

Description

Summarize probe-set using median of each unique probe and only takes in data matrix with the same number of probes per unique probe-set.

Usage

med.sum.pbset(data, pbset.id = NULL, num.per.unipbset = 10)

Arguments

data	dataset to be summarized. The dataset must have rows as probes and columns as samples. It must be a data matrix with the same number of probes per unique probe-set. If it is already on the probe-set level, no manipulation will be done.
pbset.id	a vector of unique probe-set names. If it is not specified, then by default it is set to be the unique probe names of the data.
num.per.unipbset	number of probes for each unique probe-set. By default, num.per.unipbset = 10.

Value

probe-set median summarized data

Examples

## Not run: 
uhdata.psl <- med.sum.pbset(data = uhdata.pl,
                            num.per.unipbset = 10)

## End(Not run)

LXQin/precision documentation built on May 11, 2019, 6:24 p.m.