Files in LieberInstitute/qsvaR
Generate Quality Surrogate Variable Analysis for Degradation Correction
.Rbuildignore
.github/.gitignore
.github/CODE_OF_CONDUCT.md
.github/CONTRIBUTING.md
.github/ISSUE_TEMPLATE/feature_request_template.md
.github/ISSUE_TEMPLATE/issue_template.md
.github/SUPPORT.md
.github/workflows/check-bioc.yml
.gitignore
DESCRIPTION
NAMESPACE
NEWS.md
R/DEqual.R
R/degradation_tstats-data.R
R/getDegTx.R
R/getPCs.R
R/get_qsvs.R
R/k_qsvs.R
R/qSVA.R
R/rse_tx-data.R
R/select_transcripts.R
R/transcripts-data.R
R/utils.R
README.Rmd
README.md
codecov.yml
data-raw/.gitignore
data-raw/degradation_tstats.R
data-raw/rse_tx.R
data-raw/transcripts.R
data/degradation_tstats.rda
data/rse_tx.rda
data/transcripts.rda
dev/01_create_pkg.R
dev/02_git_github_setup.R
dev/03_core_files.R
dev/04_update.R
inst/CITATION
man/DEqual.Rd
man/degradation_tstats.Rd
man/figures/DEqual_example.png
man/figures/README-DEqual-1.png
man/figures/README-DEqual-no-qSVs-1.png
man/figures/qsva_experimental_design.png
man/figures/transcripts_venn_diagramm.png
man/getDegTx.Rd
man/getPCs.Rd
man/get_qsvs.Rd
man/k_qsvs.Rd
man/normalize_tx_names.Rd
man/qSVA.Rd
man/rse_tx.Rd
man/select_transcripts.Rd
man/transcripts.Rd
man/which_tx_names.Rd
pkgdown/extra.css
tests/testthat.R
tests/testthat/test-DEqual.R
tests/testthat/test-example_test.R
tests/testthat/test-getDegTx.R
tests/testthat/test-getPCs.R
tests/testthat/test-get_qsvs.R
tests/testthat/test-k_qsvs.R
tests/testthat/test-qSVA.R
tests/testthat/test-select_transcripts.R
tests/testthat/test-utils.R
vignettes/.gitignore
vignettes/Intro_qsvaR.Rmd
