cutpos: Find the position cut by given enzyme

Description Usage Arguments Value Examples

View source: R/utility.R

Description

A function to locate the cut site of given enzyme and enzyme dataset.

Usage

1
cutpos(dnaseq, enz, dataset = redata)

Arguments

dnaseq

a string of DNA sequence

enz

the name of enzyme

dataset

the data used to store enzyme info (name and site)

Value

a data frame of cut position (name, seq, start and end), if not found, return NA.

Examples

1
2
3
dnaSeq <- 'ATCGGTTATAAGCAT'
enz <- 'AanI'
cutpos(dnaSeq, enz, redata)

LoadingBFX/rsrm documentation built on Dec. 8, 2019, 8:40 a.m.