rsmap: Construct restriction map by given fragments

In LoadingBFX/rsrm: Locating restriction sites around specific target sequence and construct restriction map by fragments

Description

This function will visualize the restriction site map, by given single and double digests reaction result. Assume the input sequence is circular.

Usage

rsmap(enz1, frag1, enz2, frag2, dou_dig, name = "Unknown Sequence")

Arguments

enz1	the name of first enzyme.
frag1	the int vector of result of the single digests reaction by enzyme1.
enz2	the name of second enzyme.
frag2	the int vector of result of the single digests reaction by enzyme2.
dou_dig	the int vector of result of the double digests reaction by enzyme1 and enzyme2.
name	the name of tested sequence

Value

restriction map

Examples

frag1 <- c(100)
frag2 <- c(50, 25, 20, 5)
dou_dig <- c(25, 25, 25, 20, 5)
enz1 <- 'enz1'
enz2 <- 'enz2'
result <- rsmap(enz1, frag1, enz2, frag2, dou_dig)
result

LoadingBFX/rsrm documentation built on Dec. 8, 2019, 8:40 a.m.