In MD-Anderson-Bioinformatics/NGCHM-R: Next Generation Clustered Heat Maps

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System Requirements

• R >= 3.5
• Java >= 11
• git, tar, scp, ssh
• Mac/Linux: typically installed by default
• Windows: Cygwin or Windows Subsystem for Linux (Windows 10)
• C compiler
• Mac: Xcode
• Linux: gcc
• Windows: Rtools or Rtools40 (Windows 10)
• NGCHMSupportFiles R package
• This package requires Java >= 11
• This package contains a compiled .jar file and minified JavaScript file

R Packages Installation

The NG-CHM R package can be installed from CRAN:

install.packages('NGCHM')

The NGCHMSupportFiles can be installed from our R-Universe repository:

install.packages('NGCHMSupportFiles', repos = c('https://md-anderson-bioinformatics.r-universe.dev', 'https://cloud.r-project.org'))

Using the Docker Image

There is also a Docker image, ngchm/rstudio-ngchm, containing RStudio, the NGCHM-R package, and all needed dependencies available on Docker Hub.

The YouTube Video, How to Create Next-Generation Clustered Heat Map in R Studio details usage of the Docker image. Further installation and usage information is available in this the RStudio NGCHM GitHub project.

MD-Anderson-Bioinformatics/NGCHM-R documentation built on April 1, 2024, 12:34 p.m.