chmExportToHTML-method: Export a standalone HTML containing the NGCHM to a file.

In MD-Anderson-Bioinformatics/NGCHM-R: Next Generation Clustered Heat Maps

Export a standalone HTML containing the NGCHM to a file.

Description

Create a standalone HTML containing the NGCHM in the specified file. This function requires Java 11 and the NGCHMSupportFiles package.

Usage

chmExportToHTML(
  chm,
  filename,
  overwrite = FALSE,
  shaidyMapGen,
  shaidyMapGenJava,
  shaidyMapGenArgs,
  ngchmWidgetPath
)

Arguments

chm	The NGCHM to generate the PDF for
filename	The file in which to save the PDF
overwrite	Overwrite file iff true (default false)
shaidyMapGen	Path to shaidyMapGen jar file (default to value of environment variable SHAIDYMAPGEN)
shaidyMapGenJava	Path to java executable with which to run shaidyMapGen (default to value of environment variable SHAIDYMAPGENJAVA or java)
shaidyMapGenArgs	Additional arguments to pass to java when running shaidyMapGen (default to value of environment variable SHAIDYMAPGENARGS)
ngchmWidgetPath	Path to location of ngchm Widget (ngchmWidget-min.js). Defaults to environment variable NGCHMWIDGETPATH.

Details

The NGCHMSupportFiles package can be installed from the R-universe repository:

install.packages('NGCHMDemoData',
repos = c('https://md-anderson-bioinformatics.r-universe.dev',
'https://cloud.r-project.org'))

Value

filename

MD-Anderson-Bioinformatics/NGCHM-R documentation built on April 1, 2024, 12:34 p.m.