chmExportToHTML-method: Export a standalone HTML containing the NGCHM to a file.
In MD-Anderson-Bioinformatics/NGCHM-R: Next Generation Clustered Heat Maps

chmExportToHTML

R Documentation

Export a standalone HTML containing the NGCHM to a file.

Description

Create a standalone HTML containing the NGCHM in the specified file. This function requires Java 11 and the NGCHMSupportFiles package.

Usage

chmExportToHTML(
  chm,
  filename,
  overwrite = FALSE,
  shaidyMapGen,
  shaidyMapGenJava,
  shaidyMapGenArgs,
  ngchmWidgetPath
)

Arguments

`chm`	The NGCHM to generate the HTML for
`filename`	The file in which to save the HTML
`overwrite`	Overwrite file iff true (default false)
`shaidyMapGen`	Path to shaidyMapGen jar file (default to value of environment variable SHAIDYMAPGEN)
`shaidyMapGenJava`	Path to java executable with which to run shaidyMapGen (default to value of environment variable SHAIDYMAPGENJAVA or java)
`shaidyMapGenArgs`	Additional arguments to pass to java when running shaidyMapGen (default to value of environment variable SHAIDYMAPGENARGS)
`ngchmWidgetPath`	Path to location of ngchm Widget (ngchmWidget-min.js). Defaults to environment variable NGCHMWIDGETPATH.

Details

The NGCHMSupportFiles package can be installed from the R-universe repository:

install.packages('NGCHMDemoData',
repos = c('https://md-anderson-bioinformatics.r-universe.dev',
'https://cloud.r-project.org'))