infectionODEs.cpp | R Documentation |
Run the SEIR model for the given parameters
infectionODEs.cpp(population, initial_infected, vaccine_calendar, contact_matrix, susceptibility, transmissibility, infection_delays, dates)
population |
The population size of the different age groups, subdivided into risk groups |
initial_infected |
The corresponding number of initially infected |
vaccine_calendar |
A vaccine calendar valid for that year |
contact_matrix |
Contact rates between different age groups |
susceptibility |
Vector with susceptibilities of each age group |
transmissibility |
The transmissibility of the strain |
infection_delays |
Vector with the time of latent infection and time infectious |
dates |
Dates to return values for. |
A data frame with number of new cases after each interval during the year
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