Files in MJomaba/flu-evidence-synthesis
Flu Evidence Synthesis: Analysing Effectiveness of Vaccine Strategies
.Rbuildignore
.clang-format
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
R/RcppExports.R
R/cost_effectiveness.R
R/data.R
R/demography.R
R/deprecated.R
R/epimodel.R
R/ggplot2_ext.R
R/mcmc.R
R/vaccine.R
README.md
autotest.sh
build.sh
data/age_sizes.rda
data/confirmed.samples.rda
data/coverage.rda
data/demography.rda
data/ili.rda
data/inference.results.rda
data/mcmcsample.rda
data/polymod_uk.rda
data/uptake.rda
data/vaccine_calendar.rda
epiEvidenceSynthesis.Rproj
inst/CITATION
install.sh
man/StatCI.Rd
man/adaptive.mcmc.Rd
man/adaptive.mcmc.cpp.Rd
man/age_group_levels.Rd
man/age_group_limits.Rd
man/age_group_mapping.Rd
man/age_sizes.Rd
man/aggregateModel.Rd
man/as.age.group.Rd
man/as.vaccination.calendar.Rd
man/as_R0.Rd
man/as_age_group.Rd
man/as_transmission_rate.Rd
man/as_vaccination_calendar.Rd
man/confirmed.samples.Rd
man/contact.matrix.Rd
man/contact_matrix.Rd
man/coverage.Rd
man/credible.interval.model.Rd
man/demography.Rd
man/dmultinom.cpp.Rd
man/getTimeFromWeekYear.Rd
man/ili.Rd
man/infectionODEs.Rd
man/infectionODEs.cpp.Rd
man/inference.Rd
man/inference.results.Rd
man/log_likelihood_cases.Rd
man/mcmcsample.Rd
man/parameter_mapping.Rd
man/polymod_uk.Rd
man/public_health_outcome.Rd
man/read.legacy.vaccine.file.Rd
man/risk_group_mapping.Rd
man/separate.into.age.groups.Rd
man/separate.into.risk.groups.Rd
man/stat_ci.Rd
man/stratify_by_age.Rd
man/stratify_by_risk.Rd
man/uptake.Rd
man/vaccinationScenario.Rd
man/vaccination_scenario.Rd
man/vaccine.calendar.Rd
man/vaccine_calendar.Rd
man/vaccine_doses.Rd
src/RcppExports.cpp
src/contacts.cc
src/contacts.h
src/data.cc
src/data.h
src/fluEvidenceSynthesis_types.h
src/inference.cc
src/inference.h
src/mcmc.h
src/model.cc
src/model.h
src/ode.cc
src/ode.h
src/proposal.cc
src/proposal.h
src/rapi.cc
src/rcppwrap.cc
src/rcppwrap.h
src/state.cc
src/state.h
src/vaccine.cc
src/vaccine.h
tests/manual/README.md
tests/manual/runManualTests.sh
tests/manual/testInference.R
tests/testthat.R
tests/testthat/testContacts.R
tests/testthat/testCostEffectiveness.R
tests/testthat/testCovariance.R
tests/testthat/testDemography.R
tests/testthat/testInference.R
tests/testthat/testMCMC.R
tests/testthat/testODE.R
tests/testthat/testVaccine.R
travis.sh
vignettes/adapting-the-transmission-model.Rmd
vignettes/inference.Rmd
vignettes/modelling.Rmd
vignettes/references.bib
vignettes/vaccination.Rmd
