vaccination_scenario | R Documentation |
Calculate number of influenza cases given a vaccination strategy
vaccination_scenario(vaccine_calendar, parameters, contact_ids, incidence_function, time_column, parameter_map, ..., verbose = T)
vaccine_calendar |
A vaccine calendar valid for that year |
parameters |
The parameters to use. Both a vector or a data frame with each row a set of parameters (e.g. a batch of inferred parameters by adaptive_mcmc$batch) are accepted. |
contact_ids |
Optional: The contact_ids used to infer the contact matrix. Similar to the |
incidence_function |
An optional function that takes a |
time_column |
An optional time column that will be removed from the data returned by the incidence_function |
parameter_map |
Optional: mapping for the parameters (by description and age group) to the relevant index
in the parameter vector. Needed parameters are: transmissibility, psi (infection from outside sources), susceptibility (with a value per age group)
and log of initial_infected population |
... |
Further parameters that will be passed to the |
verbose |
Whether to display warnings. Default is TRUE. |
The total incidence in a year per age and risk group
infectionODEs
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