infectionODEs: Run the SEIR model for the given parameters

In MJomaba/flu-evidence-synthesis: Flu Evidence Synthesis: Analysing Effectiveness of Vaccine Strategies

Run the SEIR model for the given parameters

Description

Run the SEIR model for the given parameters

Usage

infectionODEs(population, initial_infected, vaccine_calendar,
  contact_matrix, susceptibility, transmissibility, infection_delays,
  interval = 7, dates = NULL)

Arguments

population	The population size of the different age groups, subdivided into risk groups
initial_infected	The corresponding number of initially infected
vaccine_calendar	A vaccine calendar valid for that year
contact_matrix	Contact rates between different age groups
susceptibility	Vector with susceptibilities of each age group
transmissibility	The transmissibility of the strain
infection_delays	Vector with the time of latent infection and time infectious
interval	Optional: interval (in days) between data points (used if dates are not provided)
dates	Optional: dates to return values for.

Value

A data frame with number of new cases after each interval during the year

See Also

infectionODEs.cpp Used internally by this function.

MJomaba/flu-evidence-synthesis documentation built on April 26, 2022, 11:12 p.m.