deepblue_list_genes: list_genes

In MPIIComputationalEpigenetics/DeepBlue-R: DeepBlueR

Description

List the Genes currently available in DeepBlue.

Usage

deepblue_list_genes(genes = NULL, go_terms = NULL, chromosome = NULL,
  start = NULL, end = NULL, gene_model = NULL,
  user_key = deepblue_options("user_key"))

Arguments

genes	- A string or a vector of string (Name(s) or ENSEMBL ID (ENSGXXXXXXXXXXX.X ) of the gene(s).)
go_terms	- A string or a vector of string (gene ontology terms - ID or label)
chromosome	- A string or a vector of string (chromosome name(s))
start	- A int (minimum start region)
end	- A int (maximum end region)
gene_model	- A string (the gene model)
user_key	- A string (users token key)

Value

genes - A array (genes names and its content)

See Also

Other Gene models and genes identifiers: deepblue_count_gene_ontology_terms, deepblue_list_gene_models, deepblue_select_genes

Examples

deepblue_list_genes(
  chromosome="chr20",
  start=10000000,
  end=21696620,
gene_model='Gencode v22')

MPIIComputationalEpigenetics/DeepBlue-R documentation built on Aug. 11, 2021, 3:18 p.m.