deepblue_search: search

In MPIIComputationalEpigenetics/DeepBlue-R: DeepBlueR

Description

Search all data of all types for the given keyword. A minus (-) character in front of a keyword searches for data without the given keyword. The search can be restricted to the following data types are: Annotations, Biosources, Column_types, Epigenetic_marks, Experiments, Genomes, Gene_models, Gene_expressions, Genes, Gene_ontology, Projects, Samples, Techniques, Tilings.

Usage

deepblue_search(keyword = NULL, type = NULL,
  user_key = deepblue_options("user_key"))

Arguments

keyword	- A string (keyword to search by)
type	- A string or a vector of string (type of data to search for - Annotations, Biosources, Column_types, Epigenetic_marks, Experiments, Genomes, Gene_models, Gene_expressions, Genes, Gene_ontology, Projects, Samples, Techniques, Tilings)
user_key	- A string (users token key)

Value

results - A array (search results as [id, name, type])

See Also

Other Commands for all types of data: deepblue_cancel_request, deepblue_info, deepblue_is_biosource, deepblue_list_in_use, deepblue_name_to_id

Examples

deepblue_search(keyword = "DNA Methylation BLUEPRINT",
    type = "experiments")

MPIIComputationalEpigenetics/DeepBlue-R documentation built on Aug. 11, 2021, 3:18 p.m.