API for MPIIComputationalEpigenetics/muPipeR
muPipeR
| Global functions | |
|---|---|
| CommandR-class | Man page |
| CommandRsge | Man page Source code |
| CommandRsge-class | Man page |
| CommandRslurm | Man page Source code |
| CommandRslurm-class | Man page |
| CommandRsystem | Man page Source code |
| CommandRsystem-class | Man page |
| Job | Man page Source code |
| Job-class | Man page |
| JobResult | Man page Source code |
| JobResult-class | Man page |
| PipR | Man page Source code |
| PipR-class | Man page |
| addStep | Man page |
| addStep,PipR-method | Man page |
| changePipeDir | Man page |
| changePipeDir,PipR-method | Man page |
| checkErrorsInLogFiles | Man page Source code |
| cleanup | Man page |
| cleanup,PipR-method | Man page |
| doQsub | Source code |
| doSbatch | Source code |
| exec | Man page |
| exec,CommandR-method | Man page |
| exec,CommandRsge-method | Man page |
| exec,CommandRslurm-method | Man page |
| exec,CommandRsystem-method | Man page |
| getArgs | Man page |
| getArgs,Job-method | Man page |
| getCallString | Man page |
| getCallString,Job-method | Man page |
| getCmd | Man page |
| getCmd,Job-method | Man page |
| getCommand | Man page |
| getCommand,JobResult-method | Man page |
| getDepJobs | Man page |
| getDepJobs,Job-method | Man page |
| getDir | Man page |
| getDir,PipR-method | Man page |
| getErr | Man page |
| getErr,JobResult-method | Man page |
| getGraph | Man page |
| getGraph,PipR-method | Man page |
| getHashString | Man page Source code |
| getId | Man page |
| getId,Job-method | Man page |
| getLogDir | Man page |
| getLogDir,CommandR-method | Man page |
| getOut | Man page |
| getOut,JobResult-method | Man page |
| getSgeJobStatus | Source code |
| getSlurmJobStatus | Source code |
| getSlurmJobStatusTab | Source code |
| getStatus | Man page |
| getStatus,JobResult-method | Man page |
| getSteps | Man page |
| getSteps,PipR-method | Man page |
| initialize,CommandR-method | Man page |
| initializePipeDir | Man page |
| initializePipeDir,PipR-method | Man page |
| intialize,CommandRsge-method | Man page |
| intialize,CommandRslurm-method | Man page |
| intialize,CommandRsystem-method | Man page |
| intialize,Job-method | Man page |
| intialize,JobResult-method | Man page |
| intialize,PipR-method | Man page |
| lapplyExec | Man page |
| lapplyExec,CommandR-method | Man page |
| lexec | Man page |
| lexec,CommandR-method | Man page |
| lexec,CommandRsge-method | Man page |
| lexec,CommandRslurm-method | Man page |
| lexec,CommandRsystem-method | Man page |
| parallel.getNumWorkers | Man page Source code |
| parallel.isEnabled | Man page Source code |
| parallel.setup | Man page Source code |
| parallel.teardown | Man page Source code |
| plotGraph | Man page |
| plotGraph,PipR-method | Man page |
| resetStep | Man page |
| resetStep,PipR-method | Man page |
| run | Man page |
| run,PipR-method | Man page |
| waitForJobsToTerminate | Source code |
| waitForSlurmJobsToTerminate | Source code |
