CommandR-class: CommandR

In MPIIComputationalEpigenetics/muPipeR: muPipeR

CommandR

Description

A virtual class for submitting command line calls

Details

For a concrete child class employing system calls see CommandRsystem. For a concrete child class employing the sun grid engine calls see CommandRsge. If you want to implement your own child class be sure to at least implement the following functions: exec,CommandR-method.

Slots

logDir

A directory where log and error files are written to

doRun

Flag indicating whether the analysis should actually run.

handlesJobDeps

Flag indicating whether the class object can actually handle job dependencies on its own

Methods

getLogDir,CommandR-method

Get the logging directory.

exec,CommandR-method

Execute a command/job.

lexec,CommandR-method

Execute an array of commands/jobs.

Author(s)

Fabian Mueller

MPIIComputationalEpigenetics/muPipeR documentation built on Oct. 18, 2022, 2:35 a.m.