Files in MRCIEU/mrQC
CheckSumStats
.Rbuildignore
.gitignore
CheckSumStats.Rproj
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
R/ara_test_dat.R
R/charge_top_hits.R
R/charge_top_hits_cleaned.R
R/combine_plots.R
R/extract_snps.R
R/format_data.R
R/glioma_test_dat.R
R/globals.R
R/make_plot_gwas_catalog.R
R/make_plot_maf.R
R/make_plot_predlnor.R
R/make_snplist.R
R/refdat_1000G.R
R/zz_plot.R
README-example4.png
README.Rmd
README.md
data/ara_test_dat.RData
data/charge_top_hits.RData
data/charge_top_hits_cleaned.RData
data/glioma_test_dat.RData
data/refdat_1000G_superpops.RData
inst/extdata/ara_test_cleaned_dat.txt
inst/extdata/ara_test_dat.txt
inst/extdata/crc_test_dat.txt
inst/extdata/glioma_test_dat.txt
man/ara_test_dat.Rd
man/charge_top_hits.Rd
man/charge_top_hits_cleaned.Rd
man/combine_plots.Rd
man/compare_effect_to_gwascatalog.Rd
man/compare_effect_to_gwascatalog2.Rd
man/extract_sig_snps.Rd
man/extract_snps.Rd
man/figures/README-arachidonic10-1.png
man/figures/README-arachidonic2-1.png
man/figures/README-arachidonic2-2.png
man/figures/README-arachidonic3-1.png
man/figures/README-arachidonic4-1.png
man/figures/README-arachidonic5-1.png
man/figures/README-arachidonic6-1.png
man/figures/README-arachidonic7-1.png
man/figures/README-arachidonic8-1.png
man/figures/README-arachidonic8-2.png
man/figures/README-arachidonic9-1.png
man/figures/README-example1_gcplot1.png
man/figures/README-example1_gcplot2.png
man/figures/README-example1_mafplot.png
man/figures/README-example1_predplot1.png
man/figures/README-example1_predplot2.png
man/figures/README-example1_zzplot.png
man/figures/README-example2.png
man/figures/README-example2_gcplot.png
man/figures/README-example2_gcplot2.png
man/figures/README-example3_gcplot1.png
man/figures/README-example3_gcplot3.png
man/figures/README-example3_mafplot.png
man/figures/README-example3_predplot1.png
man/figures/README-example3_predplot2.png
man/figures/README-example3_zzplot.png
man/figures/README-example4.png
man/figures/README-example4_1.png
man/figures/README-example4_2.png
man/figures/README-example5.png
man/figures/README-glucose1-1.png
man/figures/README-make_gwascatalog_plot1-1.png
man/figures/README-make_gwascatalog_plot2-1.png
man/figures/README-make_maf_plot1-1.png
man/figures/README-make_maf_plot2-1.png
man/figures/README-make_plot_predlnor1-1.png
man/figures/README-make_plot_predlnor2-1.png
man/figures/README-make_plot_predlnor3-1.png
man/figures/README-make_plot_predlnor4-1.png
man/figures/README-make_zz_plot1-1.png
man/figures/README-make_zz_plot2-1.png
man/figures/README-make_zz_plot3-1.png
man/figures/README-qc_report.png
man/figures/README-qc_report2.png
man/find_hits_in_gwas_catalog.Rd
man/flag_af_conflicts.Rd
man/flag_gc_conflicts.Rd
man/flag_gc_conflicts2.Rd
man/format_data.Rd
man/get_efo.Rd
man/glioma_test_dat.Rd
man/gwas_catalog_hits.Rd
man/infer_ancestry.Rd
man/make_plot_gwas_catalog.Rd
man/make_plot_maf.Rd
man/make_plot_pred_effect.Rd
man/make_snplist.Rd
man/predict_beta_sd.Rd
man/predict_lnor_sh.Rd
man/refdat_1000G_superpops.Rd
man/transform_betas.Rd
man/zz_plot.Rd
tests/testthat.R
tests/testthat/test-make_snplist.R
