charge_top_hits: GWAS top hits for arachidonic acid in the CHARGE consortium
In MRCIEU/mrQC: CheckSumStats
charge_top_hits R Documentation
GWAS top hits for arachidonic acid in the CHARGE consortium
Description
The dataset contains rsids for single nucleotide polymorphisms extracted from a genome-wide association study of arachidonic acid in the CHARGE consortium. The list was generated by 1) extracting all SNPs with P values <5e-8 (1063 SNPs in total); and then 2) performing LD clumping on the 1063 extracted SNPs (clump_r2 = 0.01, clump_kb=10000 ) using European participants from UK Biobank as a reference dataset. Clumping was performed using ieugwasr::ld_clump. No post-GWAS filtering on allele frequency, imputation info score or number of studies was performed on the GWAS summary statistics prior to the extraction of the SNPs.
Usage
charge_top_hits
Format
A charactor vector of length 210:
Source
MRCIEU/mrQC documentation built on May 6, 2023, 1:40 p.m.
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| charge_top_hits | R Documentation |
GWAS top hits for arachidonic acid in the CHARGE consortium
Description
The dataset contains rsids for single nucleotide polymorphisms extracted from a genome-wide association study of arachidonic acid in the CHARGE consortium. The list was generated by 1) extracting all SNPs with P values <5e-8 (1063 SNPs in total); and then 2) performing LD clumping on the 1063 extracted SNPs (clump_r2 = 0.01, clump_kb=10000 ) using European participants from UK Biobank as a reference dataset. Clumping was performed using ieugwasr::ld_clump. No post-GWAS filtering on allele frequency, imputation info score or number of studies was performed on the GWAS summary statistics prior to the extraction of the SNPs.
Usage
charge_top_hits
Format
A charactor vector of length 210:
Source
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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