refdat_1000G_superpops: A dataset of reference allele frequencies from 1000 genomes...
In MRCIEU/mrQC: CheckSumStats
refdat_1000G_superpops R Documentation
A dataset of reference allele frequencies from 1000 genomes superpopulations
Description
The dataset contains minor allele frequency for 2297 SNPs that have minor allele frequency 0.1-0.3 across each superpopulation in the 1000 genomes project.
Usage
refdat_1000G_superpops
Format
A data frame with 13782 rows and 8 variables:
- CHR
chromosome number
- SNP
SNP rsid
- minor_allele
SNP minor allele
- major_allele
SNP major allele
- MAF
SNP minor allele frequency
- NCHROBS
number of observed chromosomes
- population
1000 genomes superpopulation: AFR=African; ALL=all individuals; AMR = Ad Mixed American; EAS=East Asian; EUR=European; SAS=South Asian
Source
MRCIEU/mrQC documentation built on May 6, 2023, 1:40 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| refdat_1000G_superpops | R Documentation |
A dataset of reference allele frequencies from 1000 genomes superpopulations
Description
The dataset contains minor allele frequency for 2297 SNPs that have minor allele frequency 0.1-0.3 across each superpopulation in the 1000 genomes project.
Usage
refdat_1000G_superpops
Format
A data frame with 13782 rows and 8 variables:
- CHR
chromosome number
- SNP
SNP rsid
- minor_allele
SNP minor allele
- major_allele
SNP major allele
- MAF
SNP minor allele frequency
- NCHROBS
number of observed chromosomes
- population
1000 genomes superpopulation: AFR=African; ALL=all individuals; AMR = Ad Mixed American; EAS=East Asian; EUR=European; SAS=South Asian
Source
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.