glioma_test_dat: A example dataset of genetic summary data

In MRCIEU/mrQC: CheckSumStats

A example dataset of genetic summary data

Description

The dataset contains summary association statistics for 98 SNPs, generated in logistic regression models, from a genome-wide association study of glioma conducted by the GliomaScan consortium.

Usage

glioma_test_dat

Format

A data frame with 98 rows and 20 variables:

Locus

SNP rsid

Allele1

non-effect allele

Allele2

effect allele

MAF

SNP minor allele frequency in controls|cases

Geno_Counts

genotype counts in controls/cases

Subjects

Number of participants in study

p

p value statistic describing the association between the SNP and glioma

OR

odds ratio for glioma

OR_95._CI_l

lower 95% confidence interval

OR_95._CI_u

upper 95% confidence interval

CHROMOSOME

chromosome number

LOCATION

genomic coordinates in base pairs

controls

number of controls

cases

number of cases

eaf.controls

effect allele frequency in controls

Source

https://pubmed.ncbi.nlm.nih.gov/22886559/

MRCIEU/mrQC documentation built on May 6, 2023, 1:40 p.m.