Man pages for MRCIEU/mrQC
CheckSumStats
| ara_test_dat | A example dataset of genetic summary data for arachidonic... |
| charge_top_hits | GWAS top hits for arachidonic acid in the CHARGE consortium |
| charge_top_hits_cleaned | GWAS top hits for arachidonic acid in the CHARGE consortium... |
| combine_plots | Make cow plot |
| compare_effect_to_gwascatalog | Compare the genetic effect sizes in the test dataset to the... |
| compare_effect_to_gwascatalog2 | Compare the genetic effect sizes in the test dataset to the... |
| extract_sig_snps | Extract SNPs with P value below a specified threshold (e.g.... |
| extract_snps | Extract SNPs |
| find_hits_in_gwas_catalog | Are hits in the GWAS catalog? |
| flag_af_conflicts | Flag allele frequency conflicts |
| flag_gc_conflicts | Flag conflicts with the GWAS catalog |
| flag_gc_conflicts2 | Flag conflicts with the GWAS catalog |
| format_data | format data |
| get_efo | get efo |
| glioma_test_dat | A example dataset of genetic summary data |
| gwas_catalog_hits | GWAS top hits |
| infer_ancestry | Infer ancestry |
| make_plot_gwas_catalog | Plot comparing the test study to the GWAS catalog |
| make_plot_maf | MAF plot |
| make_plot_pred_effect | Predicted versus reported effect sizes |
| make_snplist | make a SNP list |
| predict_beta_sd | Predicted standardised beta |
| predict_lnor_sh | Predicted log odds ratio |
| refdat_1000G_superpops | A dataset of reference allele frequencies from 1000 genomes... |
| transform_betas | Transform betas |
| zz_plot | ZZ plot |
