ara_test_dat | A example dataset of genetic summary data for arachidonic... |
charge_top_hits | GWAS top hits for arachidonic acid in the CHARGE consortium |
charge_top_hits_cleaned | GWAS top hits for arachidonic acid in the CHARGE consortium... |
combine_plots | Make cow plot |
compare_effect_to_gwascatalog | Compare the genetic effect sizes in the test dataset to the... |
compare_effect_to_gwascatalog2 | Compare the genetic effect sizes in the test dataset to the... |
extract_sig_snps | Extract SNPs with P value below a specified threshold (e.g.... |
extract_snps | Extract SNPs |
find_hits_in_gwas_catalog | Are hits in the GWAS catalog? |
flag_af_conflicts | Flag allele frequency conflicts |
flag_gc_conflicts | Flag conflicts with the GWAS catalog |
flag_gc_conflicts2 | Flag conflicts with the GWAS catalog |
format_data | format data |
get_efo | get efo |
glioma_test_dat | A example dataset of genetic summary data |
gwas_catalog_hits | GWAS top hits |
infer_ancestry | Infer ancestry |
make_plot_gwas_catalog | Plot comparing the test study to the GWAS catalog |
make_plot_maf | MAF plot |
make_plot_pred_effect | Predicted versus reported effect sizes |
make_snplist | make a SNP list |
predict_beta_sd | Predicted standardised beta |
predict_lnor_sh | Predicted log odds ratio |
refdat_1000G_superpops | A dataset of reference allele frequencies from 1000 genomes... |
transform_betas | Transform betas |
zz_plot | ZZ plot |
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